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70

answers:

1

Hello

how can I parametrize a shell script that is executed on a grid (started with qsub) ? I have a shell script, where I use getopts to read the parameters.

When I start (qsub script.sh -r firstparam -s secondparam ..) this working script with qsub I receive error messages,

qsub: invalid option -- s

qsub: illegal -r value

as qsub thinks the parameter are for itself. Yet I have not found any solution.

Thanks

+1  A: 

I just figured out how to solve it: just print the commands of the shell scrip with echo and pipe the result to qsub: ./script.sh | qsub

Martin