ASDoc compiling error in Flash Builder 4

Question

I can't seem to figure out why i continue getting this error every-time I try to compile ASDoc in Flash Builder 4.

I did succeed in ASDoc creating a asdoc-output folder but it is incomplete. There is only toplevel.xml and a tempdita folder that show up.

This is the error that shows up on my Console

Error at xsl:choose on line 46 of processHTML.xslt:
  java.io.FileNotFoundException:
  /Users/NEWYORK/abritez/Documents/workspaces/ate/ATE_Shell/asdoc-output/index.tmp (No such
  file or directory)
  at xsl:apply-templates (file:/Users/NEWYORK%5Cabritez/Documents/workspaces/ate/ATE_Shell/asdoc-output/tempdita/processHTML.xslt#25)
     processing /html
Transformation failed: Run-time errors were reported

Line 46 is in ProcessHTML.xslt is the initial <xsl:choose> in the element bellow.

<xsl:template match="html">
<xsl:copy-of select="$noLiveDocs"/>
<xsl:choose>
  <xsl:when test=".//frameset">
    <xsl:copy-of select="$frameDocType"/>
  </xsl:when>
  <xsl:otherwise>
    <xsl:copy-of select="$docType"/>
  </xsl:otherwise>
</xsl:choose>
<xsl:choose>
  <xsl:when test="$isLiveDocs"/>
  <xsl:otherwise>
    <xsl:value-of select="$markOfTheWeb"/>
  </xsl:otherwise>
</xsl:choose>
<xsl:element name="html">
  <xsl:apply-templates/>
  <xsl:copy-of select="$copyrightComment"/>
  <xsl:value-of select="$newline"/>
</xsl:element>
</xsl:template>

I went to External Tool Configuration and added the location of asdoc

/Applications/Adobe Flash Builder 4/sdks/flex_sdk_4.1/bin/asdoc

then i added my Working Directory

${workspace_loc:/ATE_Shell}

And lastly I inserted all my arguments

-lenient
-source-path src
-doc-sources src
-external-library-path=/Users/NEWYORK\abritez/Documents/workspaces/ate/ActivityToolkitLib/bin/ActivityToolkitLib.swc
-external-library-path=/Users/NEWYORK\abritez/Documents/workspaces/ate/ATE_Template/bin/ATE_Template.swc
-external-library-path=/Users/NEWYORK\abritez/Documents/workspaces/ate/AssesmentCommunicationLib/bin/AssesmentCommunicationLib.swc
-external-library-path=/Users/NEWYORK\abritez/Documents/workspaces/ate/BFW_UI/bin/BFW_UI.swc
-external-library-path=/Users/NEWYORK\abritez/Documents/workspaces/ate/DiagnosticReporter/bin/DiagnosticReporter.swc

UPDATE: I ended up rolling back to 3.5 and did a test application with only one method to document and got this error.

My method

package com.test
{
import mx.containers.Canvas;


public class Grouptest extends Canvas
{
    public function Grouptest()
    {
        super();
    }

    /**
     *  Hello
     * 
     * @param   value   Some string
     * */

    public function set testMe(value:String):void
    {
        trace("value " + value)
    }
}
} 

My Error

Loading configuration file /Applications/Adobe Flash Builder 4/sdks/3.5.0/frameworks/flex-config.xml Adobe ASDoc 
Version 3.5.0 build 12683 
Copyright (c) 2004-2007 Adobe Systems, Inc. All rights reserved. 

Error: '' is not a directory 
Use 'asdoc -help' for information about using the command line

Any help or point to the right direction would be greatly appriciated. I've gotten ASDoc running in the past so I am sure I must be overlooking something.