Zach's solution is very good.
Still, I was wondering why there is any need to sort. If you have the permutation of the indices, use the values as a pointer to the old array.
This may eliminate the need to sort the array in the first place. This is not a solution that can be used in all cases, but it will work fine in most cases.
For example:
a = [45,89,22,31,23,76];
b = [5,3,2,1,0,4]
Now if you want to lop through the values in a, you can do something like (pseudo-code):
for i=0 to 4
{
process(a[i]);
}
If you want to loop through the values in the new order, do:
for i=0 to 4
{
process(a[b[i]]);
}
As mentioned earlier, this soluion may be sufficient in many cases, but may not in some other cases. For other cases you can use the solution by Zach.But for the cases where this solution can be used, it is better because no sorting is needed at all.