This morning my boss and I had a long and ultimately fruitless discussion about this, in the context of trying to diagnose performance problems with a web application. We didn't really come to any conclusions.
I think we're right in thinking that Serializable non-static inner classes have issues, but we're not sure precisely what the issues are or what exactly to avoid (we reasoned that we couldn't always simply avoid it). Can anyone suggest any guidelines for not getting in trouble with this issue?